1st International e-Conference on Germplasm Data Interoperability: Overview
The 1st International e-Conference on Germplasm Data Interoperability is now over. It consisted of four (4) sessions which took place between 6 and 20 of December 2013 and was co-organized by Bioversity International, the Food and Agriculture Organization of the United Nations, Agro-Know Technologies and supported by the agINFRA EU project. The aim of the e-Conference was to bring together stakeholders in the area of plant germplasm and traits. The participants were encouraged to discuss the current status of the interoperability between the different data sources and resources, such as the metadata schemas and classification systems used. In this direction, the e-Conference aimed to focus on the Linked Data approach to be followed in order to enable the linking of data from heterogeneous data sources and in various data formats.
Indeed, the e-Conference managed to bring together various stakeholders including:
- people working with and responsible for germplasm aggregators such as Matija Obreza from Genesys, Theo van Hindum from EURISCO and Dag Endresen from GBIF,
- people responsible for national germplasm inventories/databases, such as Maria-Antonietta Palombi (Italian National Germplasm Database)
- people working with germplasm metadata and vocabularies, such as Dag Endresen (Natural History Museum of Oslo) and Éamonn Ó Tuama from GBIF
- people with experience in the linked data approach, such as Luca Mateis (Bioversity International), Valeria Pesce (EGFAR) and Pierre-Yves Chibon (ex-Wageningen University, now Red Hat)
- people working with germplasm standards and large networks, such as Elizabeth Arnaud (Bioversity International) and Michael Marus (CGIAR)
- people working not only with plant germplasm (in vitro) but also with traits (in vivo), like Elizabeth Arnaud (Bioversity International) and Marie Angelique Laporte from iDiv.
The e-Conference had the following structure:
- Session 1 (6/12/2013, Synchronous): The vision of Linked Germplasm Data (Video, Google Event page)
- Session 2 (11/12/2013, Synchronous): Data providers' perspective on current status & use of data and metadata for germplasm (Video, Google event page)
- Session 3 (19/12/2013, Asynchronous): Set up an infrastructure for germplasm data (Google event page)
- Session 4 (20/12/2013, Synchronous): Standard and metatadata for bringing germplasm data to breeding/in situ/on farm data (Video, Google event page)
All presentations are available at the website of the e-Conference. The participation of AK was focused on the aims, objectives and outcomes of the agINFRA Germplasm Working Group (in which FAO is also actively involved), which has been working towards the harmonization of the germplasm standards as well as the development of a linked germplasm data approach.
The e-Conference was implemented using Google Hangouts, which allowed the presenters to share screens/slides and discuss while the audience could show a live stream of the presentations and comment in the page of the video or the event. We had some technical issues during the sessions (e.g. screen sharing not always working, full-screen sharing of presentations not working etc.) but in the end it was the content that mattered.
The comments received led some really interesting discussions and in fact there have been some of them which are going to drive things in the next months and move some steps forward towards the linking of the existing germplasm data sources and the work towards the adoption of common standards in all cases (where possible). For example, the use of VocBench as the tool for the management of the common vocabulries and the use of AGROVOC as the backbone for the linking of the different KOSs currently used.
Overall, it was a really interesting and fruitful experience, which I hope that will enable the collaboration between the various stakeholders who actually participated in the meeting and will provide a "vehicle" for repeating the e-Conference during 2014, probably in a less formal way, enabling the frequent meeting of the stakeholders (e.g. in the form of e-seminars or workshops).